{"id":13082,"date":"2022-09-22T11:48:45","date_gmt":"2022-09-22T15:48:45","guid":{"rendered":"http:\/\/132.236.156.160\/cuccap\/?p=13082"},"modified":"2022-09-23T10:07:21","modified_gmt":"2022-09-23T14:07:21","slug":"cucurbit-genomics-database-version-2","status":"publish","type":"post","link":"http:\/\/132.236.156.160\/cuccap\/2022\/09\/22\/cucurbit-genomics-database-version-2\/","title":{"rendered":"Cucurbit Genomics Database version 2"},"content":{"rendered":"<div id=\"attachment_13134\" style=\"width: 243px\" class=\"wp-caption alignleft\"><a href=\"http:\/\/cucurbitgenomics.org\/v2\/\"><img aria-describedby=\"caption-attachment-13134\" decoding=\"async\" loading=\"lazy\" class=\"wp-image-13134 size-medium\" src=\"http:\/\/132.236.156.160\/cuccap\/wp-content\/uploads\/sites\/6\/2022\/09\/www.cucurbitgenomics.org-v2-233x300.jpg\" alt=\"cugendbv2-website-homepage\" width=\"233\" height=\"300\" srcset=\"http:\/\/132.236.156.160\/cuccap\/wp-content\/uploads\/sites\/6\/2022\/09\/www.cucurbitgenomics.org-v2-233x300.jpg 233w, http:\/\/132.236.156.160\/cuccap\/wp-content\/uploads\/sites\/6\/2022\/09\/www.cucurbitgenomics.org-v2-117x150.jpg 117w, http:\/\/132.236.156.160\/cuccap\/wp-content\/uploads\/sites\/6\/2022\/09\/www.cucurbitgenomics.org-v2.jpg 420w\" sizes=\"(max-width: 233px) 100vw, 233px\" \/><\/a><p id=\"caption-attachment-13134\" class=\"wp-caption-text\">Visit version 2 of the Cucurbit genomics database.<\/p><\/div>\n<p>Version 2 of the Cucurbit Genomics database (<a href=\"http:\/\/cucurbitgenomics.org\/v2\/\" target=\"_blank\" rel=\"noopener\"><strong>CuGenDBv2<\/strong><\/a>) was released by the <a href=\"http:\/\/bioinfo.bti.cornell.edu\/\" target=\"_blank\" rel=\"noopener\"><strong>Fei lab at BTI<\/strong><\/a> in April 2022. Database users will notice improved speed and performance. The updated database includes 33 reference genomes from 26 cucurbit species\/subspecies belonging to 10 different genera; novel functions for mining and analysis of large-scale variant data; and a comprehensive cucurbit expression atlas.<\/p>\n<p><a class=\"btn btn-default btn-md\" href=\"http:\/\/cucurbitgenomics.org\/v2\/node\/2816456\" target=\"_blank\" rel=\"noopener\">View the Version 2 Release Note<\/a><\/p>\n<h2>Recent Database updates<\/h2>\n<ul>\n<li style=\"list-style-type: none\">\n<ul>\n<li>September 2022: <strong><a href=\"http:\/\/cucurbitgenomics.org\/cgi-bin\/synview\" target=\"_blank\" rel=\"noopener\">The synteny tool<\/a><\/strong> has been reimplemented to improve the overall database performance. Links to synteny information of each specific gene is now provided in the gene overview page.<\/li>\n<li>August 2022: To improve the readability, gene IDs for six genomes have been changed.<\/li>\n<li>June 2022: The <strong><a href=\"http:\/\/cucurbitgenomics.org\/v2\/genotype\" target=\"_blank\" rel=\"noopener\">&#8220;Genotype&#8221;<\/a><\/strong>module was developed in CuGenDBv2. This module allows users to extract, analyze and download large-scale variant data.<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<p><a class=\"btn btn-default btn-md\" href=\"http:\/\/cucurbitgenomics.org\/v2\/news\" target=\"_blank\" rel=\"noopener\">Continue Reading<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Version 2 of the Cucurbit Genomics database (CuGenDBv2) was released in April 2022. Database users will notice improved speed and performance.The updated database includes 33 reference genomes from 26 cucurbit species\/subspecies belonging to 10 different genera; novel functions for mining and analysis of large-scale variant data; and a comprehensive cucurbit expression atlas.<\/p>\n","protected":false},"author":8,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"quote","meta":{"footnotes":""},"categories":[270],"tags":[671,457],"_links":{"self":[{"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/posts\/13082"}],"collection":[{"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/users\/8"}],"replies":[{"embeddable":true,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/comments?post=13082"}],"version-history":[{"count":13,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/posts\/13082\/revisions"}],"predecessor-version":[{"id":13157,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/posts\/13082\/revisions\/13157"}],"wp:attachment":[{"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/media?parent=13082"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/categories?post=13082"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/tags?post=13082"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}