{"id":12607,"date":"2022-04-30T02:26:23","date_gmt":"2022-04-30T06:26:23","guid":{"rendered":"http:\/\/132.236.156.160\/cuccap\/?p=12607"},"modified":"2022-05-24T02:36:55","modified_gmt":"2022-05-24T06:36:55","slug":"cuccap-bioinformatics-team-releases-version-2-of-cucurbit-genomics-database","status":"publish","type":"post","link":"http:\/\/132.236.156.160\/cuccap\/2022\/04\/30\/cuccap-bioinformatics-team-releases-version-2-of-cucurbit-genomics-database\/","title":{"rendered":"CucCAP Bioinformatics team releases version 2 of Cucurbit Genomics Database"},"content":{"rendered":"<h2>Release note (April, 2022)<\/h2>\n<p>Version 2 of Cucurbit Genomics Database (CuGenDBv2) includes the latest versions of 33 cucurbit genome assemblies. The list of these genome assemblies is provided here:<\/p>\n<ul>\n<li>Protein-coding genes of the 33 cucurbit genomes were functionally annotated.<\/li>\n<li>Pathways were predicted for each of the 33 cucurbit genomes.<\/li>\n<li>RNA-Seq raw reads were downloaded from NCBI SRA and processed to derive gene expression values for each gene in the database. Here is an example (cucumber Chinese Long gene CsaV3_4G023380)<\/li>\n<li>Synteny blocks were identified between and within the 33 cucurbit genomes.<\/li>\n<\/ul>\n<p><a class=\"btn btn-default btn-md\" href=\"http:\/\/cucurbitgenomics.org\/v2\" target=\"_blank\" rel=\"noopener noreferrer\">Continue Reading<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Version 2 of the Cucurbit Genomics Database (CuGenDBv2) is up running. The release note was published in April 2022.<\/p>\n","protected":false},"author":8,"featured_media":0,"comment_status":"closed","ping_status":"closed","sticky":false,"template":"","format":"quote","meta":{"footnotes":""},"categories":[270],"tags":[457],"_links":{"self":[{"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/posts\/12607"}],"collection":[{"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/users\/8"}],"replies":[{"embeddable":true,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/comments?post=12607"}],"version-history":[{"count":2,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/posts\/12607\/revisions"}],"predecessor-version":[{"id":12609,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/posts\/12607\/revisions\/12609"}],"wp:attachment":[{"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/media?parent=12607"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/categories?post=12607"},{"taxonomy":"post_tag","embeddable":true,"href":"http:\/\/132.236.156.160\/cuccap\/wp-json\/wp\/v2\/tags?post=12607"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}